NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102945_1049779

Scaffold Ga0102945_1049779


Overview

Basic Information
Taxon OID3300007609 Open in IMG/M
Scaffold IDGa0102945_1049779 Open in IMG/M
Source Dataset NameSalt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)821
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4958Long. (o)-122.1331Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018208Metagenome / Metatranscriptome236N
F054048Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0102945_10497791F018208GAGGMKRIQEDFEYIYFFKDAFNSKLIGRPYLINENGFNEDEIKEAKEFIKKNGTEFYTVDDDDLDKTEGYYYSKDGIDFPPLDKMEADSGHTKLYYYENNK
Ga0102945_10497792F054048AGGMTNINDIIKPLNKIADTLDEVLTLVKKDMEDSKSRITAQWDNELDKREVVKKDENFNYSQLELPFPEVE*

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