Scaffold Ga0102945_1005073

Overview

Basic Information

• Taxon OID: 3300007609
• Scaffold ID: Ga0102945_1005073
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3423
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4958
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F016811	Metagenome / Metatranscriptome	244	Y
F092935	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102945_10050731	F092935	N/A	MDKYSLIKDRKKAFAELVRAYLKFNVASATDIVVNEDGDISINGTLFKFDVSDYTGKTEAYIFFNPSNGRMVIENKSVKKIYKLEVDLVDD*
Ga0102945_10050734	F016811	N/A	MEQEQQPQEGQMIYDVGVRLAWKKKRGNGYTNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKIMSFVGLTGKANYDFYVQKEFYRKEISKSFTHKESEYSKEFGESE*
Ga0102945_10050735	F005010	N/A	MREVQKYLDMLMIDNVNLSIQASRFGWSEDVQNQLTNSALLIRKYQRRLRLIKM*