Scaffold Ga0102945_1003791

Overview

Basic Information

• Taxon OID: 3300007609
• Scaffold ID: Ga0102945_1003791
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4045
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4958
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008221	Metagenome / Metatranscriptome	337	Y
F017490	Metagenome / Metatranscriptome	240	Y
F034192	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102945_10037913	F008221	N/A	MTISTTKLVDDDDKIIVNANGVGSETEQTLVDVVNSNNASSEPKVSIANIQYEVVGTGDVTVFFKGDTSKSVIINGRGNYGLKPSEERIKDTIGDILLTSDSNVTKYNIVIEAQKESGYTNG*
Ga0102945_10037914	F017490	GAG	MADTCVKIKGTSTAAGATISASNFGRAHFVRIQTQAAANTITLKNAGGSTLGTLILVAANDSIIIEKEESDTLETSGNAVGVAVSSPR*
Ga0102945_10037915	F034192	AGG	MQVSRIVKENLQIESKAFKELSPKMKEAVSDVFKLIEKEQGNVIKRFENAVNKIAEFHNINLEHFDEYFDKEILEQLREK*