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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007609 Open in IMG/M |
| Scaffold ID | Ga0102945_1001213 Open in IMG/M |
| Source Dataset Name | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7478 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South San Francisco, USA | |||||||
| Coordinates | Lat. (o) | 37.4958 | Long. (o) | -122.1331 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031446 | Metagenome / Metatranscriptome | 182 | Y |
| F043342 | Metagenome / Metatranscriptome | 156 | Y |
| F081085 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0102945_10012132 | F043342 | AGGA | MDATTELREFYNYIWGIESVVSTPTFVYLPVEHEGKWTPYMFEWPRQREGVIRHTLKWSAIKANVFYSPALFKAANPAKDNVLGSWMLWVDFDGNAPKEWDQEAEEGKMFVPPPTLIVQSSIEGHEHCYWKLDNFVDDIETLEDRNRALAYVMHADTSGWDADQILRPIRTTNHKRNMPVIVKEWEREDAV* |
| Ga0102945_10012137 | F031446 | GGAG | VIDEDDMWLDANFKLYEPHQDDYVVLEVESRGVGRPMSEPSEITDITSTGRKRAAMMYPIFKDMKCEWAGLRYAGGGVEPIIGCFGSVIQPTKGPDKGDRHHGPDKNVINNAPDNVHRICSTCHNRWHALNNKYYGPRPAADEPFMPLEEYVCKKHDAETKATDKEIADNETWWATKHNLLANVDTE* |
| Ga0102945_10012139 | F081085 | GGGGG | MIDDEFMDENEFWVDDLYDMDEGQLRQEAEQYARLARMYPHPTGKHSMAYQFAYLRHTEAMKILEARAHNA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |