Scaffold Ga0102945_1000144

Overview

Basic Information

• Taxon OID: 3300007609
• Scaffold ID: Ga0102945_1000144
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22567
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (31.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4958
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008239	Metagenome / Metatranscriptome	336	Y
F030253	Metagenome	186	Y
F030897	Metagenome / Metatranscriptome	184	N
F044500	Metagenome	154	N
F046025	Metagenome / Metatranscriptome	152	N
F046651	Metagenome / Metatranscriptome	151	N
F056919	Metagenome / Metatranscriptome	137	N
F100722	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102945_100014410	F046025	AGTAG	MKVLFNQNISGADFYYLAGQVVELPAATAQEFLNANFCEVVEEKKEAKAERAVSNKTTKRTTRKAK*
Ga0102945_100014415	F046651	GAG	MKITLTKKVTLPSGKKLAKGLTLSVVNEYGRELIEAGKAVEFGVEAPAIIEEQINKLD*
Ga0102945_100014423	F044500	AGGAG	MNRLKEKAQEIKAELTLRFDSLRKIWQYSDSQPTEITLAAALVILYPTATYLELGYSPLMQVLAPIAGLYQLYCVSGKCLSCRVRASWVTFSFYLLAAVMYLYCGLLFKGPSYWGWVLLTISSFGSLKRIKKEELHRTNG*
Ga0102945_100014424	F100722	AGGA	MDNNTQIIIAVVTLLGSAGIWKYAEARLRVKAELRKEEQSTNDTVLYRDDLKNRVEEMDKALKEAHKELLELTQKVAKLETENSFLRREIDILKRN*
Ga0102945_100014426	F030897	N/A	MQLEAGTLILKVSGIEVEVPVVWDLVQGGPLYAMKDGQIFLSLTAEELKALYVIYRDLELKGTVEDA*
Ga0102945_100014432	F030253	N/A	MKKSIQKYLRKKKHIKYVDLYLSDTRWEIVNTVIAASSTEYNYAVQRHLDNLGQLVRKYERRRRWLKF*
Ga0102945_100014434	F008239	N/A	MREILLDMYEKLWNADKDKWAWNVILKDTLEKLETKDDTER*
Ga0102945_10001445	F056919	N/A	MKIKRVIQYAGAEILETQPGSFTALPNTPSFYGSRKFNSLAKAKFYLKQWNKK*