Scaffold Ga0102923_1125076

Overview

Basic Information

• Taxon OID: 3300007606
• Scaffold ID: Ga0102923_1125076
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1569-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 806
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2861
  • Long. (^o): -123.7318

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F028166	Metagenome / Metatranscriptome	192	Y
F078716	Metagenome / Metatranscriptome	116	N
F088905	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102923_11250761	F028166	N/A	NDLTGFNETKPGATNNLDLNPTGQAPASAFPSTDVSTQDGSGLGQNGK*
Ga0102923_11250762	F088905	N/A	MSEKDIDMVNGVPVAETVVAEEAKPKTETAAPASNADAVVDYWANAWANRGV*
Ga0102923_11250763	F001280	GAGG	MCIECGCESLGSETGIIPVSITDVSRDGESGLTLDMTSTPEQTRQFINE*
Ga0102923_11250764	F078716	N/A	MSENGTGTPTAPISEPSGALTSREVPRKYPRQGSRPGIKIDRNKHGIRRETSLDPKPQKKGRPKKV*