Scaffold Ga0102923_1070241

Overview

Basic Information

• Taxon OID: 3300007606
• Scaffold ID: Ga0102923_1070241
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1569-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1101
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2861
  • Long. (^o): -123.7318

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008402	Metagenome / Metatranscriptome	334	Y
F013514	Metagenome / Metatranscriptome	270	Y
F099191	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102923_10702412	F099191	N/A	MKRNNFNFMDAWIVLVTGGVVLVFLAAPIIGVMKVITTQQALNEQCGTRYNFFQVATAGDNLSRLCQIKNQTVTIK*
Ga0102923_10702413	F008402	N/A	MEISTQIRIQQHEGYYYTVEDTHLDVGCEGCTISIWADGKRGEYICMDKEEALAIADAIYKLFKN*
Ga0102923_10702414	F013514	N/A	MLVDNIEELQKYLDDNNITFEEYMRANMITDGERKYINKIWVDAIYKNLGEDT*