Scaffold Ga0102919_1033473

Overview

Basic Information

• Taxon OID: 3300007597
• Scaffold ID: Ga0102919_1033473
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1563A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1591
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2103
  • Long. (^o): -123.7517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F009266	Metagenome / Metatranscriptome	320	Y
F019834	Metagenome	227	N
F027179	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102919_10334731	F002406	N/A	MENIKWIRAMSDRLRDELSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDEE*
Ga0102919_10334732	F019834	GAGG	MKELKFTITGTIFVPDNVEYENDFENQIYTFKINDKTYSLIAGLEADDKEMIVTDENFKSHDIKPFEYEDAYFED*
Ga0102919_10334733	F027179	GAG	MPTLKIEKFIYMADGLFLYEKENSYVVMDQNDNVLKEAKTSKTCSSYISKTLQSRRAAERYAIEEINKSKV*
Ga0102919_10334735	F002398	AGG	MIALISIFLLTALDPIKNFVSLKTYISENAKAHCYVYFINEDVPDFPRVNIIEKSKFDFFAYLDTIGIEHSKVGSYYFFQRKPK*
Ga0102919_10334736	F009266	AGGA	MTNKERKILDKEIQYLCDYQDRVKAIREYTGIHPHKTFLNEVETIESLYRSVLENRKQCESTYFSVGTAGLFVVYLRDKKKYKEGEDFSIKIYHTFVWSDNLD*