NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102918_1167144

Scaffold Ga0102918_1167144


Overview

Basic Information
Taxon OID3300007593 Open in IMG/M
Scaffold IDGa0102918_1167144 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1563A-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)665
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2103Long. (o)-123.7517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011298Metagenome / Metatranscriptome292Y
F088881Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0102918_11671441F011298N/AMAHFVKLSVLDPGHDDIENQNNRKYNPQLINLDMVINVEQSKVHSLIFTKSNSTHPIRVKESLDEIIEMSHG
Ga0102918_11671442F088881AGGAMSATINYNVDSIQCYTTYDQYTDVVVKVGWSCIGSGIAEAGPQSGSTVSLSYPSTTPLTLNSGSWDSGSFVPFNQLTNQVIMGWVFGQIGESGKDIIDNYVTEQVQQMINPTIVNLPLPW

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