Scaffold Ga0102917_1084170

Overview

Basic Information

• Taxon OID: 3300007590
• Scaffold ID: Ga0102917_1084170
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1122
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2105
  • Long. (^o): -123.7516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023103	Metagenome	211	N
F035667	Metagenome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102917_10841701	F035667	N/A	ITGWGFREIMEELPFAVGLQLLHADDYANGRHSAWANNNARVDIDALATIEQTLAKHGKIQIRECEI*
Ga0102917_10841702	F023103	GAG	VKFEQIMKDYATIREVTIPDAVMLNARLLCVELARRTQPFGENSTAGTIRVKNDIGKIIKNTDQLDEYADRVGSQSIKARLNALIKKGRFDIVETILRNIGFLNKWTGMEFISASKIKPIHKDARNKTTGRTKSRGSSLFVASNSDQETYIAEVQKRVGMSKGGWANCATQLKRVNKGSLLSNFPKWVIKAMKAGSGSVKDMTSDLKNPRVEMTNNIPWASNVIPETEKEFAKAVIVAKMKKQMEAILKKRQKGLIET*