Scaffold Ga0102917_1020758

Overview

Basic Information

• Taxon OID: 3300007590
• Scaffold ID: Ga0102917_1020758
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2266
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2105
  • Long. (^o): -123.7516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010764	Metagenome / Metatranscriptome	299	Y
F037700	Metagenome / Metatranscriptome	167	Y
F048261	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102917_10207581	F048261	AGAAG	MTEPLNHKLDVSKIRTLTDVKNLFECMNLISNATETNEQYELIKEYFTIPNEPQELKLELPRKSLEEISQEFDEKIDKQIEDVEYKFAQLKYYQEYQFSKKITRIIEDIEYVRRNGSFPAKLDYSKLTATGGNITSSFVIKEGGKEVGYYTFGNGYLKYYMNKKPTAIVRF
Ga0102917_10207585	F037700	GGA	MKKYRIKKETYGNTTKYFPQEKFLYSWYNIFAYEVYFDGGYDTLEEARKRLCEYCREPVVEYLDFEPARDCK*
Ga0102917_10207586	F010764	GGAG	MIEIEKNYKLTLTEQQAKELYWILKDVDLGVDNELKLVYHELKKLFDTGIR*