Scaffold Ga0104970_1000006

Overview

Basic Information

• Taxon OID: 3300007566
• Scaffold ID: Ga0104970_1000006
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763840445 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 238556
• Total Scaffold Genes: 225
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 196 (87.11%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103435	Metagenome	101	N
F105379	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104970_1000006125	F103435	AGGAG	MKFVFCTEPIYQYYRAHLYDADKDKLDKQLLVEYGDYKDIWDLKQQQDALPENIFKAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPDFEDIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVANDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDDIDFSPEGAQIAYLQRHTYLALESKSTIEPLRVWYPFDMNSYTNALE*
Ga0104970_1000006134	F089057	GGAGG	MTNIIPIIAKKYNRKGDTSGSLKSLVSDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDIITSDDIYIKIFGNVLTFLNMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGIFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRTVLSRYLSNM*
Ga0104970_1000006172	F099452	AGCAGG	MDKTYEELLQETLSKIYELKDLDNRDRGKALTIFIGERLNRELLLSSRHIFTLYKDIINLDDVSLLTDLRKTDWYKDWFTDDRNNANLINLSRFNFKTLARFEKEEYLRDAEHYDFEGVIEVDSYGLFDTLIEDKDVELFKLAAENILINHGFFHNTDYNFYDVPDEYMEDKEVCAYMCLLNIGNMDFVDKKTLDTTVLYNIVKDRICGSIYFTLFDSLNKDTRTIAR*
Ga0104970_100000618	F105379	AGGAGG	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGIGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLGKITQLEPSKDNPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIITRTDEFHNTDCYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIVVNQSMLFLPY*
Ga0104970_1000006221	F092232	GGAGG	MNSQSKFIAEYNDRNRPKFNDRFFCKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYAEVQKLLIGEETPSISIKDSDLKLLKVTYYVGCTKDEETFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTATSAKTQSITLKTNSNAVKMLRNFVDLNTTKEESIRLAMFSVYLFDHKVTLFEYYLARFGWYDTLEKFNFQDIIRITDYDIDDPEYYTFAIANSHMKSPFYISAVKSFVDNDRILQSFIASFQRAIMLFATKKTTLDQIYTTQFWIQKLGFNFVSSETSTFTKGNAIIESLENSYDIPTKKRLRLPDEIKADIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINIKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNHGVYEWNSFTNEEEPNVWDDNFSKMLNVYREEKGYTSAIMLAEDAGLELTDTRDPDAVAFDAQLLGQTIAMVARTREFETQLRPALINMEDSCSIYFEEA*
Ga0104970_100000644	F092229	AGGAG	MSENYRFDHIPEVVLRNVKFIRENNIDIGTGDDVLDCMMEINPVLRQRIYDDYDLAKDVAERRFRSTIEELDLATVLQKCTTRPYIAILNNIFFRYFNSKLIDDMFKLGESTKVLDLAIEYECEYYTINSAKTNIRRYMQQAYFDKYAADSNIISSHRVLNDPQVNAVKSAEFTYDLFTAARSEKFNPEMVRDIFLKYGLKTNSSRNLYTRMNNNLSLYYYMEDYLTEYMLKGSFTYGSQVYSTIKEFKCLPLMNVLTQLTRHNPSGYVLDSNLELVKG*
Ga0104970_100000666	F099453	N/A	MLRRKDMNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVSGYLDKKTNIARTTPYGCIYVSLEAFADTVEAYKFIDTDQIRNLALEIIIHELTHVDQLIDYRYIKFNNGYREEIERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLVGLSDVTYAFKNPAVIAMSKLEHMIGKKFKEFNSNDIEIVYVDRLKNYYKIPVCINRMYHNSQNLNDLGERLLNDKQYTIEYMEYGNSKLVIKITQGA*
Ga0104970_100000669	F080166	N/A	MEVTFNGILKRLGNDVRENFHTEYIVNSGSLTTNVKYRYRMKLSPKGEQTCVYIDWDNYDDLFNVLEESIKICDPENPRTPFKRTYSDKGDLLDIRCNSLQVKYQHLNDRFGNTIDLIPFVLVDEQSGLLTEAIRFRFNNELVYDVPISRLKGFRRFLMTYNPLLHAGAMARYMAMTPLLGSNRQNMMRS*