Scaffold Ga0102915_1035997

Overview

Basic Information

• Taxon OID: 3300007562
• Scaffold ID: Ga0102915_1035997
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1639
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2637
  • Long. (^o): -123.4651

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F008552	Metagenome	331	Y
F009750	Metagenome	313	Y
F013087	Metagenome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102915_10359971	F009750	AGG	MVPIMLKYAIFEPSQTMKEIITAIYQNGKFKDNKILKPHLTDRIGIRMTFPEGAECILWTNGKKYYAVCEAFGTIFTVSIPRNLGDDIWDRFKTEFEGNYSYNS
Ga0102915_10359972	F001561	GGAG	MQTREQKLVYLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAINKKDTVWLFQAEKFAKRYLSLNSNGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDVPLSTHHSLISVCEKSGDKIRAIGYCKMTLARFPNDPYTKSKLEVLTKL*
Ga0102915_10359973	F013087	N/A	MEPTVWIYFSKTCTGYELKGSDVISGFDAFINMDGTYMVEYAFSDMKSSMHFFIYEWDNSQKKRRTIFEGYQRENILVNFAKNVHVCHLVRQAIYKEYLMDNEELELEKNANS*
Ga0102915_10359974	F008552	N/A	SANVDSTLFGYFSMEYDPEFFSDIKENLTDIPKSKPLAFKLDIDNVKLLQGAFHNIRRIICIPDVEKNKFTYVFKRNFETGTAKKFKYAKLHIDKDYFYFTGHHENVDGKKPVEFQSLNFDARFIDTIQNQYIKHQENMVN*