Scaffold Ga0102915

Basic Information
Taxon OID	3300007562 Open in IMG/M
Scaffold ID	Ga0102915_1006327 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007562 Open in IMG/M

Scaffold ID

Ga0102915_1006327 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3957
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3957

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2637	Long. (^o)	-123.4651	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2637

Long. (^o)

-123.4651

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F015599	Metagenome / Metatranscriptome	253	Y
F018537	Metagenome	234	Y
F059953	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102915_10063271	F059953	N/A	IKDMNLELTLMELNDLYYVVSKGVESHKELVEIAKRTTPELEKYFEKELSKSVQLLDKIQTALIHETNVVDDEPEYDSAGFTEDDRMQEVKSEKKLFTLNNDR*
Ga0102915_10063272	F002092	N/A	MRTTNQKAIDYLNGNPIVKDFINKVNIQRKDHYVKADMVSQWKELTVEVGQKYIRLWVGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYSTYGPEYL*
Ga0102915_10063274	F018537	N/A	MASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKSWGRSRQNDVPWRVAQYIDIYLHHDNPNRIRIWKKQGMERKNLQLNDTNVMIAGTLGSMGYSLADGVKHTKQSRPSSPLMAIRELQYQTQMKDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLCNRVSFSQLKSHYDIVMRGNATTQNGGSFIHHLHSLIDARNAIGRRCGRYLYKDTDGKYKVSNI*
Ga0102915_10063277	F015599	N/A	VVKIKVMKLTIKNYEKLFRKEWDDKNYIEDIDERRDEYKISVWRGHMRHFIILNRRPVDNGYYTIGKWSNEAFCVRYPYWIKHEDIVNINSLMDKLKLLTDDWTPKLL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102915_1006327

Overview

Ecosystem & Geography

Associated Families

Sequences