Scaffold Ga0102828_1035641

Overview

Basic Information

• Taxon OID: 3300007559
• Scaffold ID: Ga0102828_1035641
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1129
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006986	Metagenome	360	Y
F078386	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102828_10356411	F078386	AGGA	MRILTAIMATLASLTYTFGIAQAVSAPAHDHRATVHLDPKSADRLDPIPADQPIVFRHGDVSWLPALALKAGWTADQIPKLTEIVLRESGGCPNRRGGDMVDKDCNITGVSEWNHRSDTSLMQVNGLNYDPTRNPTAPICLQMKICTQEPLFDPLTNLKAGKLLYDYWEKAAGNGWIPWDPCNRTRTCKASTKSL
Ga0102828_10356412	F006986	N/A	VSVVLVTWHDAHSGAESWINIKDLDSEPAVVESVGFLLNEDNGGKPNHLTLFQSRMEDSVDHVLHIPVGMVQKIKVLMELEINI*