Scaffold Ga0102828_1013705

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0102828_1013705

Scaffold Ga0102828_1013705

Overview

Basic Information
Taxon OID	3300007559 Open in IMG/M
Scaffold ID	Ga0102828_1013705 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1694
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014380	Metagenome / Metatranscriptome	263	Y
F093878	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102828_10137051	F014380	N/A	MAIVNQVDKRVRMTTWQIVKYQILTHCYLQGIQVSEADLECLTYLAVEGDQELTSFCIKAHAKTIFSSTQSVRNCLTKAEKKKLIVKEGKNKKKIFINPIMNVHSKG
Ga0102828_10137053	F093878	N/A	MSEEQKIPTKEELIAFFAEQVEVKRAQLELQKISTELAVAKAEEMKALAFIAQMTTQQSTSQPQPEGTPHTITQEDLDNNPELLEAGLAVGDDIIIPTAAQFAEGVPAKKLKKK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.