Scaffold Ga0102828_1003553

Overview

Basic Information

• Taxon OID: 3300007559
• Scaffold ID: Ga0102828_1003553
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2932
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F015866	Metagenome	251	Y
F035670	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102828_10035534	F035670	GAGG	MTELNIFEKAMGWRKRQMVKSQVLRNEITEKIRNETLEEVASKFDRMYALGDTAQSFATYVRDLKTKER*
Ga0102828_10035537	F002707	GGAG	MTQIDALTQCLILAITAPTDEKAIQASQLAEQIAQGLTKKQINLCKKKALEILENK*
Ga0102828_10035538	F015866	AGG	MKFYKAILDSRRFHFEAYAINETLAKEHLKLGLNNHAKDYQMPLDWWHEYGGDIYVVEIEIGRPDFNSCYRDNHLISEKK*