Scaffold Ga0102828_1000806

Overview

Basic Information

• Taxon OID: 3300007559
• Scaffold ID: Ga0102828_1000806
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5545
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006182	Metagenome	379	Y
F010618	Metagenome	301	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102828_10008066	F010618	AGAAG	MTLKELILKLQELDKKYEQYSQDTEVVLAVHSKNEYNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEIEQED*
Ga0102828_10008068	F006182	AGG	MKSLQFNVTGSMQVPDDVIFHYDVAGKLYAYENDGVMYMLQMCLVAKQGAGGWEIVHQFEEMENHSITNVRYDDAEFAIKD*