Scaffold Ga0102828_1000090

Overview

Basic Information

• Taxon OID: 3300007559
• Scaffold ID: Ga0102828_1000090
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15843
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014365	Metagenome	263	Y
F054866	Metagenome	139	Y
F061672	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102828_100009018	F061672	N/A	MTPAELEHFKNCEAQEWIRRFNQKKLTIGSTKALLWWQGVCVDLERIRGESATLDLRDRMNKLRDNK*
Ga0102828_100009026	F014365	N/A	MKTFQIFKNVSYEYFIEAETLEDAQNKIIEENPDYESEELIEWVFLDEHDGADWKYEPVLQAS*
Ga0102828_100009029	F054866	AGG	MPKYTIIHGSIAAVQYVTLPDGDKVIVTDARDGSEIELPKLPLEVQAAVNRQFGTIFALPYDSRQGFIDNSIPFDVEVTE*