Scaffold Ga0102822_1027390

Overview

Basic Information

• Taxon OID: 3300007558
• Scaffold ID: Ga0102822_1027390
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1363
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F059873	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102822_10273902	F002399	AGGTGG	MTIKTKTHKSIIGQLRKKYGLKDNTPIHKVEQTMTPKDWQAFSEALTFPNGKPSQKGK*
Ga0102822_10273905	F004603	AGGA	MIFSININGNIVDWSYNLDCQDKQYHKTWIPKLRDIQIITKDLNSLTVSEVKKIILEDIQPDITMVKEHNNKLARARRMEK*
Ga0102822_10273906	F059873	AGGAG	MSIEYFGVKIKATTYGDFADDVKEITHADIRLNVPCEVSKEKKFEKAKDNLLKAVIDMYALEDQNQVDVTIEYEYFGVNN*