Scaffold Ga0102821_1050761

Overview

Basic Information

• Taxon OID: 3300007557
• Scaffold ID: Ga0102821_1050761
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1079
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013137	Metagenome / Metatranscriptome	274	Y
F033217	Metagenome / Metatranscriptome	178	Y
F066127	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102821_10507612	F013137	AGGAG	MSNESVVNMVDSLTGGDNVAAQDAFKSALTDKIGMALDAKRQTVANDWLNAGDDMEAIEAGSELSGQSSFDAVAAQVDADAHVDFEIDDDQVEEE*
Ga0102821_10507613	F066127	GAGG	VSEISFKSFTGKLDERKTSLPTTQFNKLSPKMKAAITDMYAMINKSSDPLISKIEGIVKAVSKKHGVSVYDIEDYIDNELIK*
Ga0102821_10507614	F033217	AGGA	MAIATRTLKDTKIATGSGAAGGKVTVLVNMDDNTTANSNI