Scaffold Ga0102817_1033931

Overview

Basic Information

• Taxon OID: 3300007555
• Scaffold ID: Ga0102817_1033931
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1122
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008078	Metagenome / Metatranscriptome	339	Y
F022882	Metagenome / Metatranscriptome	212	N
F038230	Metagenome	166	N
F061663	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102817_10339311	F061663	N/A	TYERLAGVTYPSDKNNYIMTAKDGANCKKLVTWLKKVSASEQAADEMVTMFTTAAWQISDKWLKANFTISNIYSQANNIYTKFMYSNPAAQEKRRQEEIERLVNEYQP*
Ga0102817_10339312	F008078	N/A	MKQTPKQKAKELVDHYYILIQDIGGELGQEILVSILAKHCALFAARVMLQDKWNKDDYDQYSYWEEVEHEIENYE*
Ga0102817_10339313	F038230	N/A	MNNKQDRNAYMKEYMKKYRATMNEYTYKKIRERENLRLRAKYHAMTDEERQKYIEYQRTYHKLKQFINE*
Ga0102817_10339314	F022882	N/A	MSNLTKYQPRNSDEQAIITARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQLAANEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDN