Scaffold Ga0102817

Basic Information
Taxon OID	3300007555 Open in IMG/M
Scaffold ID	Ga0102817_1003130 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007555 Open in IMG/M

Scaffold ID

Ga0102817_1003130 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4067
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4067

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2

Long. (^o)

-123.94

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F018136	Metagenome / Metatranscriptome	236	N
F023103	Metagenome	211	N
F044972	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102817_10031302	F023103	GAGG	MAKFKFESVKFEQIMADYATIREVTIPDAVSLNARLLCVELARRTQPFGEEQTSGTIRVKNDIGKIIKPPVQLLAMANKVENKKIAQRLKSLIMSQRYDIVETIFRNLGFLNKWTGLEFLDSKGAIKTHHQDARVKPTGRTKTRGSKLFISSGSELNTYITEIQKRVGISKGGWAECASQLKKVNKGGLLTGFPSWVKKATRSGSGSVQDLTSNIKSPKVTLINNVPWVSQILPASEQLNALSVVSTKMRNQMNTILKKRQKTLVET*
Ga0102817_10031304	F009267	N/A	MKKIKDNELRAAIFGVSVEKLEKDDEIIRIQAMEDGPKIVNGRILRPITALTISWMQRNEVFSGTMDLVWKSAAFAYLHSEPYSAIRSVVNDRSAFINAVDSWIENNMIHHLEISAMTDAMNAAFELYNASATESKAGSGSGN*
Ga0102817_10031305	F011222	N/A	MDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGVNDKGQDASQVYRQMTKEGDELEEKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK*
Ga0102817_10031306	F044972	N/A	MPATVITSSVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDRLAVTYFNKSATISLDGVINGGVAYELANILTLANDTTSYGVSGGAVIVDSVSEKTGAGTFKSITVSATQYPEIV*
Ga0102817_10031307	F018136	N/A	MITDATYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCIRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCVSHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSSNERHFERSVTITVHAALFAS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102817_1003130

Overview

Ecosystem & Geography

Associated Families

Sequences