Basic Information | |
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Taxon OID | 3300007554 Open in IMG/M |
Scaffold ID | Ga0102820_1103933 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 683 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.2 | Long. (o) | -123.94 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F031840 | Metagenome / Metatranscriptome | 181 | N |
F041775 | Metagenome / Metatranscriptome | 159 | Y |
F091571 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0102820_11039331 | F041775 | N/A | ALEANELAMAFIHDKLIEPMQENNLLDEDAFSLLNVVGGALKAIANKAHSYETLYENKTNASFYRN* |
Ga0102820_11039332 | F091571 | N/A | MQVSTATKKYLITKSNDGCVIAIRSEDKTDKTDFFIGEATMKKNIDNNTFIRHNHLNYNNEPIYIYHEDL* |
Ga0102820_11039333 | F031840 | N/A | MKTFDDLTFTPHANLQDLGVQASLTLDNGYAFSVVGNTEGGDFFYGDHPNTYEVAVFNQRGDFVPLGKHDNVLAHQSPLQISKLIKQFDLDGILHEKLLVD |
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