Scaffold Ga0102820_1041439

Overview

Basic Information

• Taxon OID: 3300007554
• Scaffold ID: Ga0102820_1041439
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1122
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F052534	Metagenome	142	N
F069439	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102820_10414391	F069439	N/A	LQKIQNTNFTIYTNKNFKNSIFIKTNAKNNLTYMCSSMQKVALCLQAHNLKNATVRILTKRFNNVVQKNLAHAAVIRIANA*
Ga0102820_10414392	F003769	AGGAG	MQQLKTITKTTTTKTKSVHVDVLYAVIENCYNNLQVLESDCTAANYFCASANIFAQLQVLYANTASCNNNNYVSLESIMDVFANNITYYDESNMYTSVVENTALQKVKLENYACLSN*
Ga0102820_10414393	F052534	N/A	MQQEQAMLKQKALTKNLIATLCTTSNTLFVHNNKTVKKAAFNNLPATYMQNAKKFLINKLAQSTILKS*