Scaffold Ga0102820_1003342

Overview

Basic Information

• Taxon OID: 3300007554
• Scaffold ID: Ga0102820_1003342
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4495
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009521	Metagenome / Metatranscriptome	316	Y
F021404	Metagenome	219	Y
F022084	Metagenome	216	Y
F080492	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102820_10033422	F009521	AGG	MKYKIIINNGTLKGFLAFRGSCLATMQDKYKRLEQQGHKLKLIRGE*
Ga0102820_10033424	F080492	AGGAG	MSKVHHTQYKKNYKNYILDCLETEDELIGKNLSDDEKINYLFDRFGNEYGFQIERIGEYRAMTEWLSGLAINIPYTYSDIIELAIDMGSIDNNPSEALKDRVIENYFSFMANVILSFKSKEVA*
Ga0102820_10033425	F022084	GAGG	MTHQKYLKELFKLIEGKGYTIECECEGEEITKDEALTQVDETAIYVIDKDGHSLGWIYFLFWNDWDESISDYTLDLDKILNLDGFIKSFTYNY*
Ga0102820_10033426	F021404	GAGG	MTYKINDKIDYFFKGDEDNEPCNDVMIVKALKDLDNDEVFKLKPTANNNNVLVKGDYDKSTGKYWATKWHDMNNETLKDGNTLVFTGFIF*