Scaffold Ga0102820_1003180

Overview

Basic Information

• Taxon OID: 3300007554
• Scaffold ID: Ga0102820_1003180
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4628
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102820_10031803	F018155	GGAG	MGQNSKAVSKRREELEQEKLDKSIKMYYFQKGAGEHYREIQYQSGRVVRTDFND*
Ga0102820_10031804	F013088	AGGAG	MDEKTKKALWISEDLHKEIKIFAIKNNMNIETASQMVLKLGMCSYKAEKKNGSK*
Ga0102820_10031808	F001942	N/A	MPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCFPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFVFAAENSRSQSETYRQYTCDILAFVFFDDEQKRIMFKPNTSSQNYFTFDKKAITETMELDSLQETLATLSSVPVLNPII*