Scaffold Ga0102820_1001860

Overview

Basic Information

• Taxon OID: 3300007554
• Scaffold ID: Ga0102820_1001860
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6276
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F058166	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102820_10018602	F006845	AGG	MDLNSYLLEEDFEEFCRKSYERISLACEVFGIVNDEDYYSFKERCYTQLETDYLNSIDKTIH*
Ga0102820_10018603	F058166	AGGAG	MDILGGMSNSSDSQQVYLAFKTADQQFFVNGQTAIDFKYLQLDPATFKSGWGRYAGEYQYQWDAKFGEASPKPADDWKRAFSCCVMPYGHEHALIWSRFTFAESSAFNKILSSFWNQMDANSNSLPVVEYKGSKEIQVGIGRSSELSFEFSKFAPRFDNFVIPAFYDKDDDAVEDTFKSPNDGLADKVQEMVDKNELTDDDIPF*
Ga0102820_10018605	F002221	AGGAG	MNTYLNDSLKDKLKQLRIYEAETKVKWGNLKRIYKMVGVDFEIKFLKAEQMLKTSLRTDPPKKQIIMVEMMLRAYEQLNIKCEESGYIMIQPNAKCFTFDKKTALICDTDDEKPVLELIHKDEKDIMIFSIEELLRCIPNDFMRAKELLSKLDKSVNIQRVDYV*