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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007552 Open in IMG/M |
| Scaffold ID | Ga0102818_1000683 Open in IMG/M |
| Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7864 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.2 | Long. (o) | -123.94 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009527 | Metagenome / Metatranscriptome | 316 | Y |
| F054789 | Metagenome / Metatranscriptome | 139 | N |
| F090175 | Metagenome / Metatranscriptome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0102818_10006837 | F090175 | GAGG | LSDEEAASSSHKGGAKGRTWADVFVGASYLTGGGLFVVAMAVLLYFLVGEVPGWFFIALLSSLVFIPFMMERAKDDASLILVSDGPHRLTEYRIGNRVGLEIEGNSVLFQSNSGVMRQVLTSIDVENKTAIGSEFANATQIDQVRDLTTLQQMVEMLQSTLKESRISAQTVGVEVEKQSIEIVDWALKTIYGAIIPTEVSESFGIEETRMEIEIDDTIEDMVDDFE* |
| Ga0102818_10006838 | F009527 | GGTGG | MKRNCFPPSIVNLLLQEGQRWKVNGSMREALGTGIIPIVASARGGKTSLAYAFIDYVIEHTNRPVILDSFPQVVIDEGIPPHWAGRVSNTSFNDIAKVEGPAVWLLDDAATNFNSRSSMSNGNQTLSKAAGVLSHFGGGMTVLFTTQSMSGIDLSLLRYTTISPIIRWVDADLIPQERKEWKGEIEHGQWELRKICKDIRFRDYFWSAKDGMLVKAPFPKFLSKEVDPKKADLLSRPMRYHSIEDKEVMLGIVKPPQKRRQKRKKVEP* |
| Ga0102818_10006839 | F054789 | AGAAG | MAAARLSKMKGGIPRHIALSNSKSITLRNKLKRLGIEGDHVDAALNMVDEIGLQEVMSNQPLGSRFASMPQSKRKAKVWKP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |