Scaffold Ga0102881_1006551

Overview

Basic Information

• Taxon OID: 3300007551
• Scaffold ID: Ga0102881_1006551
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3315
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2322
  • Long. (^o): -123.8817

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F015599	Metagenome / Metatranscriptome	253	Y
F018537	Metagenome	234	Y
F018924	Metagenome	232	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102881_10065514	F015599	GGTGG	MKLTIKNYEKLFRREWDDKNYIEDIDERRDEYRINVWRGNMRHFIILNRRPVENGYYTIGKWSNEAFCVRYPYWIKHEDIVNIDSLMDKLKLMTDEWKPKLL*
Ga0102881_10065516	F018924	N/A	MTNSEKAIAQLFGVLCSVIKSEHTPQQTKQATINTFQHLIGEDGSPFLDDELIKLSTAMDMEMQSIVRQLNGDRMLNEVLSNNVNLN*
Ga0102881_10065517	F018537	N/A	MAANRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKSWGRSRQNDVPWRVAQYIDIYLHHDNPNRIRIWKKQGMERKNLQLNDTNVMIARTLGSMGYSLADGVKHTKQSRPSSPLMAIRELQYQTQMKDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLCNRVSFSQLKSHYDIVMRGNATTQNGGSFIHHLHSLIDMRNAIGRRCGRYLYKDTDGKYKVSNI*
Ga0102881_10065519	F002092	N/A	MRTTNQKAIEYLNGNPIVANFINKVNIQRKDHYVKADMVSQWKELIVEVGQKYIRLWVGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYSTYGPEYL*