Scaffold Ga0102879_1008356

Overview

Basic Information

• Taxon OID: 3300007549
• Scaffold ID: Ga0102879_1008356
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3670
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2319
  • Long. (^o): -123.8812

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017827	Metagenome / Metatranscriptome	238	Y
F021984	Metagenome / Metatranscriptome	216	Y
F030087	Metagenome	186	N
F090374	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102879_10083561	F017827	N/A	SMNYEKFGEFKNIPANKQRVIKAGTPVITFTDMFGRNFFFPYRTKKQRSEISDILRLLKVENNLLNRILSDYSVKMGKYVNESKLRKELREAFGFSKSNIDSILTIH*
Ga0102879_100835612	F090374	N/A	MNSTHSIVEAYNDIENIHSIERERNKTMSDPKYIQWVKELRVSQLYTNRELIHNANRLMKQYTH
Ga0102879_10083563	F030087	N/A	MNSETRREILDIIMEIGYGDNTFMLTNSMYGLFDGYLYDELIQYADEVTMSKALYRRILKVFNTVCQYPKYARYVEPAGEYNEPEPVEYRAGMGVAEGKQYLATI*
Ga0102879_10083566	F021984	N/A	MRENKTINMSYTIPRGYTITPKVKFLRTKEGKKRTQLVELTHKRKGIAKLFGNEAYAIKYIQSLESDKVTSNALAGKGAPTPGKAGILAASKDIAAEKELNGVYDDMTNEEAKQLDNPFFQPLKLI*