Scaffold Ga0102877_1055905

Overview

Basic Information

• Taxon OID: 3300007548
• Scaffold ID: Ga0102877_1055905
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1139
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2319
  • Long. (^o): -123.8812

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F035667	Metagenome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102877_10559051	F011222	N/A	MPLAPRLKGAAFFKYMDCNIKFFHTINLKAAVALATLNFKMNKPPVTRLVRTDGKESTEFWFEGENDKGQDASQVYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK*
Ga0102877_10559052	F009267	N/A	MKKNKDNDLVKDDEILRIQAMEDGPKKVNGRTMRPITALTISWMQRNEVFSGEMDPVWKAAAFTFLHSESMSTIRGAVNDRDTFINAVDSWIEKNMKHHHETSAMSEAMGSAFDLYNSASPASEAGEGSGSPN*
Ga0102877_10559053	F035667	GAG	MEELPFAVGLQLLHADDYANGRHSAWANNNARVDVDALATIEQTLAKHGKIQIRECEI*