NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102877_1043616

Scaffold Ga0102877_1043616


Overview

Basic Information
Taxon OID3300007548 Open in IMG/M
Scaffold IDGa0102877_1043616 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1548B-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1303
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2319Long. (o)-123.8812Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041195Metagenome / Metatranscriptome160N
F063401Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0102877_10436161F063401N/AMKRNIIHIIYPADKVVSFVHESDDTVENILEIAFGMFNHGSGSENELFLKSNYRSLSVNDIVAVNALYFQCLSFGWKEVTAEFVNDLEDEVENNPNMIYSPWHALQDVMWNRQDSVMETV
Ga0102877_10436163F041195N/AYTWLSDTMVNCWHNYYNVNSNTVSISHKQSYLFGFYNGLVSKLDANKVSVEKEKLKTVDEQNKYSIVVVNLQKKIQSFIEDEFPKLRTGATKRISMDSNSYNNGLKDGINCNIAKGGIGNRAVAQLA*

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