Scaffold Ga0102875_1050002

Overview

Basic Information

• Taxon OID: 3300007547
• Scaffold ID: Ga0102875_1050002
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1367
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021095	Metagenome	220	N
F041737	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102875_10500021	F021095	N/A	MSITVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPSLTQTGFVDHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELADWSLSPYFRIGSSFNSVQPLTTPTAFTVYHGGSNFLAINGTKYTTVSANDTWLVSARVAYKSVNYDFAVSPSLSGTTDFNIQRFACGPANLSGTITALSGAVEGDSYTVQFLGNAGLGSVQTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAE
Ga0102875_10500022	F041737	N/A	DTSFVVAIVANDYWKYVDLGVKGAVSSSRAPNSPFQYRDKRPPIRPIQEWIAFKSIQLEGRDKKAANRSFAINIANKIRREGLRATNFMSNAATKEMVDVLTENIAEVLGKSISVATVR*