Scaffold Ga0102875_1040100

Overview

Basic Information

• Taxon OID: 3300007547
• Scaffold ID: Ga0102875_1040100
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1539
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F019614	Metagenome / Metatranscriptome	228	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102875_10401002	F019614	N/A	MLEVSTWWVYSIYTMNVASIASNKIQVEYSAMPGDNREFLTFKVPNGWDDVKRLTNKVLTHNNKDFTFSGWNSDRNECYFVRLVNGPSFVASIR*
Ga0102875_10401003	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIRKENNVAIYQRFNTDGTPRSYEVFIIKVVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCREIGQAEERFDQLVIKAKDSADAKEEAAKTGVRNRGRRASGNKIKLDMTLNKGTKFTAKFLMSVLGVTQPVLFPIIKQWEKEGSIKVNGSVKGEGKGRPATEYIVV*
Ga0102875_10401004	F015582	N/A	LEELNHYVNTLATPSAEAVALYSAKLSNLEDIHTEIRAKYPNFMPIYDTSTDSECNHDLGKYQEMSYSISQRDMRRE*