Scaffold Ga0102875

Basic Information
Taxon OID	3300007547 Open in IMG/M
Scaffold ID	Ga0102875_1004179 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007547 Open in IMG/M

Scaffold ID

Ga0102875_1004179 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4953
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (14.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4953

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (14.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2314	Long. (^o)	-123.8828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2314

Long. (^o)

-123.8828

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005387	Metagenome / Metatranscriptome	402	Y
F010397	Metagenome / Metatranscriptome	304	Y
F025652	Metagenome	200	N
F055439	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102875_100417910	F055439	N/A	MNKISESIIVTYAKALRRIQTEQVDPYIELIEKELIKLYPELKDREDNALNWAYDIINADSTAEVIETLDRIKQIFEEEYKEKWVCCICGKNTYNVDCEYLAGIDHLSCLTTEELKKSNPLKNKDELSEVKNQFVNMKMYIKQLEEHIQRLEKQYDEPTN*
Ga0102875_100417913	F010397	AGGA	MNPSEFERTKPTITMKKINDLIKLIDEERVKTEILYKDRSRSLGDIKNLLLDKKDSFKKCK*
Ga0102875_10041794	F005387	N/A	MEKLNRKGFFSTLFGGIAGVVAGSTVKASEPIVPPPVVETVVTCDKLVFTHSSGASCVMSFKDSDNFTVRVNNSENISINIHSPLKKPDFVKTETDYGFYGNNGNNGNTQMTITSNGNLGLGTRNPTAKLDIRG*
Ga0102875_10041795	F025652	N/A	MNNKTYFYRVAHKKYSWNGRYPMGPYAFFNESRFLLNIQKVPFSGCAYEKFVEFTSKEIVEYKKFNINNFNLKWVPTLPNAWRPGPFEDIDLREKMILRMGTMTKNGKFHLYGFDSLMQASKWYNNQEELQFLEDNEFRMYKFQIKSKNLIMGKTQSVYFPDINDDMDMLWISSTKLTDLNKSVNINNTTQTINKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102875_1004179

Overview

Ecosystem & Geography

Associated Families

Sequences