Scaffold Ga0102874_1023589

Overview

Basic Information

• Taxon OID: 3300007546
• Scaffold ID: Ga0102874_1023589
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2012
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031764	Metagenome / Metatranscriptome	181	Y
F034567	Metagenome / Metatranscriptome	174	Y
F058818	Metagenome / Metatranscriptome	134	N
F066775	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102874_10235891	F031764	N/A	DVIKLLADLNAEIQDEAPKQVIDKDVLLTTFRQMLSEKDWDNVVDKDDIELSMGYDNKVEVDSVTINEDYLIDEAVDALEALWDALEEAASED*
Ga0102874_10235893	F034567	GGAG	LINLFNYYDYVNHYGNRMYAIAGVKAMPVRYSSILFTGSYDECMERLDPKGLEGSIEDIYHRVAFPK*
Ga0102874_10235894	F058818	N/A	MMEELLEKQTILSDIAGELYGELWIMNEKFWGSPTERELQEVTMSLLNLGHRVENTPEGDEAAKIVAKKFGFGLPPED*
Ga0102874_10235895	F066775	GAG	MTKNESLEIIKAALIEKRDVIQLACSALEKEAKEEKKAIFEWLFADELVSYAGVAIEVGYNGLYFKIGNKEIGSINERSYWRAEDKDKKYYFNTYATSCEDEFEFRRLIFNGRVAERMLNDMDSLKEAFDTPFSKKEELEALSLEFHILSGEIKQKDYQMQEARKQDIIDKLNGEGVEWTSGKSFEFNRQWSSYLVKKLKINKATKSGKTVDL