Scaffold Ga0102874_1021550

Overview

Basic Information

• Taxon OID: 3300007546
• Scaffold ID: Ga0102874_1021550
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2110
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Straboviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047683	Metagenome	149	N
F054874	Metagenome / Metatranscriptome	139	Y
F081348	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102874_10215501	F047683	N/A	IMTLTVEQIESTFAAPTEGLADSYYPVLAYWIPIAKLEEVRAAYRAANTTIRIRYRGPRTVSVGREMSRPDKTTYLRSRHRAMQDCLIADATHFTVYDYTAR*
Ga0102874_10215502	F054874	N/A	LDGYCQQLVIGVEVMPNEAKGGTFAPADMELLKRALHYYKDMLTRIEESERSLSPELTQVANLLHRIGRIA*
Ga0102874_10215506	F081348	AGGAG	MENVMFEKVPYGVKVRVRGNEQAGFIAEYVICPYRFLSFMDNWNLISRYTHTPFTKHGTFPTLELAKEAAMTKYDSLINHFRHDEEQKKIAEAQRKVVWKHP*