Scaffold Ga0102874_1000706

Overview

Basic Information

• Taxon OID: 3300007546
• Scaffold ID: Ga0102874_1000706
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11578
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004696	Metagenome	427	Y
F008491	Metagenome / Metatranscriptome	332	Y
F017128	Metagenome	242	Y
F076068	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102874_10007061	F008491	N/A	PKNNMAKKISTKVNYQVTELVNNLNEAATTQSEQKRDFFTTKALYNAKRLSSILSTAKVGAMTLILAISMVACGQAEVKSTEASAPVSADTTATSSVVDTASVVK*
Ga0102874_10007063	F004696	N/A	MDYAIMKLKQDEIVLMKKIKGLQDGKPKWAASKQMDEIRSAIALLERYNEMSAEDMENEDEYLKQIFEQHPAKAKA*
Ga0102874_10007064	F017128	N/A	MDSITHIDIERYNSIEEQRHNTMGDNNFIEWCKQYNIGSRVEVVSEQRLKANELMSQYTKYTNYISKRN*
Ga0102874_10007066	F076068	N/A	MIKESVYVEAADAFGTSIGVAHIIGFKNKSEQIKEEGIESFKKIEPELEVNYIILDAIDENKYQELQREVYKIKQKGDKRLKEKTIYRKALEIVLYGKK*