Scaffold Ga0102874_1000612

Overview

Basic Information

• Taxon OID: 3300007546
• Scaffold ID: Ga0102874_1000612
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12407
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020010	Metagenome	226	Y
F081358	Metagenome / Metatranscriptome	114	N
F097353	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102874_100061224	F097353	N/A	MIKLKDIVYKENKEMNEKFSVQGMRAREIISTILTKTDFAAGDVDSQKKHKRMIDDLVNIINNFYDKYDIDKKITL*
Ga0102874_100061225	F081358	N/A	MIKLKDMIKESTQSDKLASEINRAISRIDDSMSYVDFAHAVGKVLKDEYGSHNYESFIKELRKKI*
Ga0102874_10006129	F020010	N/A	MATSNFHNVNATNIFAVQLEDEWAYDDLVSNLESEFSKYSDYYDDGKSDPNELSSFPSKSLGSFSNMVTIEDDTVEIYLTPVIRSGYYEGCNLDWHIRYYVNGSEDDTYSDDARVSTIANDYIEFIEDIFEQYSQPLGVTARFSNGETIYHAIK*