Scaffold Ga0102873_1026055

Overview

Basic Information

• Taxon OID: 3300007545
• Scaffold ID: Ga0102873_1026055
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1794
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F009402	Metagenome	318	Y
F038093	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102873_10260551	F038093	N/A	MDKIKINFFILRYGAILHTIFVFPILYMADIYANTPMFWAFLLNHVMFGYFILVQGCALGIKQTINIIAHQDAAKAREEDTNKNN*
Ga0102873_10260552	F009402	N/A	MKKLDEQFESAGFKYKQTHREDMFAIYERRYINTTKDHHYEAIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCITKKEAYTRLDRMMKEDVINKEAANKKAERKNAK*
Ga0102873_10260554	F006546	N/A	MKWKYIGNRTGDAAKGEQYIVEADELTELYMKNQPYPQTVNVYVVQPPSPRNNWSKNNVGDIIKICNPY