Scaffold Ga0102873_1016064

Overview

Basic Information

• Taxon OID: 3300007545
• Scaffold ID: Ga0102873_1016064
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2307
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004924	Metagenome / Metatranscriptome	418	Y
F013757	Metagenome / Metatranscriptome	268	Y
F020008	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102873_10160641	F004924	N/A	MRYNTHIATKEHTMRDAILAKLAEVEEMLLEATLDGEQLAEMAVFEEVTGALNTLTEAVDYYVD*
Ga0102873_10160645	F020008	N/A	MSAARAKVYCMQNTLQSYGQESYMLNVTSAKFRKDIEAKKAKFIAKLEKEKIAKMQAEIAHLQAKQTA*
Ga0102873_10160646	F013757	AGGA	MLTNCIAKAKLVYNKKLQAYKLVVAFNAHKQFKKDKYGNEKVVYAFPTQAKCAYVSGDLLANNLQNELASVLPTVYATLRTNSVEFVD*