Scaffold Ga0102873_1013419

Overview

Basic Information

• Taxon OID: 3300007545
• Scaffold ID: Ga0102873_1013419
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2528
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001338	Metagenome / Metatranscriptome	719	Y
F002038	Metagenome / Metatranscriptome	600	Y
F074555	Metagenome	119	Y
F098917	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102873_10134191	F074555	N/A	LDPMAFLHNAIAHAHAQNELMAANARIKQLEERLEGMREAGDQLWYCVRHAQRIHADELIDAIEEWQEARNHG*
Ga0102873_10134192	F002038	AGGAGG	MADIPKGIEKIATTVPKQYALLLFLDGFPYVEMTARKHADFLTDLNAWKRKTYPSLSRSNVRFFTLAPTGELKELTFTK*
Ga0102873_10134193	F098917	N/A	MTNREYLRNILNQLAGEVATLRPTHEDALRIANEDLMQLQISINEAAAELERLDADNIEEAYHVKPVYDRIKAVIAHERVLRNQLDRIALAADSAIDLCNLLSAHVEEHGPNDDDAAL*
Ga0102873_10134195	F001338	N/A	MTTPNQDRPPLKSIETAGTYKLKLIKPAFDKIRAWEDGTVSCRLFFLDDQGNCLSKSFSSKWGKPLAMLVGKFSGTFTQELRLDATPAEFMEYITPACGKTCLLGVEAEPSGEYNGKPQYKYKLTYPKGSQKPVVNDLPNPEDVPY*