Scaffold Ga0102873_1011062

Overview

Basic Information

• Taxon OID: 3300007545
• Scaffold ID: Ga0102873_1011062
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2785
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F007921	Metagenome / Metatranscriptome	342	Y
F021988	Metagenome / Metatranscriptome	216	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102873_10110621	F073565	AGGAG	MSDGQNLTGFNEVKPVTNTSWNGEQYAADPASAFPSTDKSTQDGSGVGNNGK*
Ga0102873_10110622	F001280	N/A	MCIECGCNIFGVADLAPATIVDASRDGESGLTLDMTSTPEQTRQFINE*
Ga0102873_10110623	F021988	N/A	MSNFQKEDGTGMTTPPAAGAASGAVTSRETPKRYPRQGLKIDTNKHGIRRETNLNQQPKKGRPKKV*
Ga0102873_10110625	F007921	N/A	MESLHGKRIQRMIDWLVNRIFRWDPLRKAIFDEVRLYQSVDRSMWEYEKEGPSNLTWSEGDKWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWAREEAESK*