Scaffold Ga0102873_1001802

Overview

Basic Information

• Taxon OID: 3300007545
• Scaffold ID: Ga0102873_1001802
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6869
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002935	Metagenome	519	Y
F003422	Metagenome / Metatranscriptome	487	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102873_100180211	F001460	N/A	MINAVHDAKLFYLRTPSDLMDKTELRKDLEDAVSFLQGLWAEGYFD*
Ga0102873_100180212	F084239	AGG	MEYLKIHEISLMQDLEEIDYVNEHHFYRCKEAEILNTRHILSVATDIMNNSNEREYE*
Ga0102873_100180216	F000441	AGGAGG	MKMSDVYINDQLNKAQQLLWGGSETENIEAHNIIAKLIKDRIEQTDLT*
Ga0102873_10018023	F002935	AGG	MRDRTKGYVGNVLDGKKLAIIATEIVKAQYNNPSELTIDNLLLIELEEKNVFGDPKYAVVCSEGVGWEQDEYGCLEIPTNIGAMGLYNGRVFISIDKVKSCQTLFKEDISDYIRTFGDRLDRNCSLWQSKMSVEPATILG*
Ga0102873_10018024	F003422	N/A	MTNELVSSKYTFVCDPDECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIPPITTTKEEKMETTTPAVIVPDTYNANLLVTYKVIKGYSDPEYATDKVASIEWDLHNARQTQKRNAVLQDKIDAVKDIITEAYGDSDDQETLRSIAEALDIALTRTIEWSATIEVSGTMELDLLEDSDTDVEQEIYDNLSVDTNHGNIEVIDQEVTNVREN*
Ga0102873_10018028	F001125	GGCGG	MGDRANFGFKDRKGDTVFLYGHWAGHRMLENLANAVEAARPRWTDESYATRIAISHLINDEWKSETGWGISVNALTDNEHKVPVIDWANATFTLMEEDLTTEVFSSSLDVFVNKYSQLEEPAMV*