Scaffold Ga0102861_1049141

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1049141
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1094
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027416	Metagenome	194	N
F050949	Metagenome	144	N
F054034	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_10491411	F050949	N/A	MLTIKNRGYLISDSFYDKMGMYWVVDKIIDDTDEYLILIENRKGPKEIFSLKKQNLYGIGYVLGLLDDNRHINKNMYKIKTYIPIETISDKRLLIKRMTEMIDTSYDI*
Ga0102861_10491412	F027416	N/A	MLTIENIQKLKGCKVGANGMVWKILATKELDYNSENIYSIVLTTYPDNIHRIHLYLDRELKDGQYHLTSSKSDIMRVVERQDMVDVYNFLRLIKKEIERANLC*
Ga0102861_10491413	F054034	AGG	MLTINNFKKLEGLVLMDGLNVESIFEFNERYSIWLSDGTNIEIDRDRHWKGGNYTYYKMYIAGGTPAMTEFIMIGTINTLDRMKKHLIYITEKYKTK*