Scaffold Ga0102861_1027794

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1027794
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1427
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001433	Metagenome	695	Y
F003150	Metagenome / Metatranscriptome	504	Y
F023062	Metagenome	211	Y
F036031	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_10277941	F001433	N/A	MEINMPLNNSDDVLSKILAYVDSPFKLFAIILMAILVFGAWAFYENKELIVGTYKESQKLPSIAEDRVDDVAAHLFKTTDATVVTIFKVNPLFGTRVQYRAYTKTGRDKTNDGLDVGLFTSNQSNNQDVVALMAGDIPCGGYKAAQSEIGLWYIEKGMTFGCRISVPPDPSRFIGQITVG
Ga0102861_10277942	F003150	AGG	VSDPFGIIDGTKKVTKTLNESVKASEELSKAIDGVLAVADKAAKERAASRKNSRVISPDTTTIIEAVDEFQRLMLAKQSEEKIKEEITKKYGSKAWDEIQGIKARKQWEDRRDKYLEQSDRRIMKSVMALCYIFATWVAYECTWGRWK*
Ga0102861_10277943	F023062	N/A	MPNMSFEIDPVKYGVLWQKVDNYEAKFDDMSKKIDKMEASIEELVAMANRSRGGLWVGLGVVSVISSLVGFIAHWFSNKGL*
Ga0102861_10277944	F036031	GAG	MDRIEIDVITGEKKTIELTAEEVAQAQASYAEWLAAQPTKEEQIAKLQAQIDALNA*