Scaffold Ga0102861_1019208

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1019208
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1689
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F005558	Metagenome	396	Y
F027417	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_10192081	F027417	N/A	RPMSYDYRVTFVTDYLTITTNVCLELDDTIGNLSDEAYEQATINGMNNIEDEIGKIDETVINDITVTLLLDEAEIELGSFGEFPPVHVEVIE*
Ga0102861_10192083	F005558	AGGAG	MDKDTMYWSELAELTHATQVEKFNWCMCEDNDGEENPYADCPKEESK*
Ga0102861_10192084	F000821	AGGAGG	VNKEYLEAKFNLCINEAEKDLQEQEIARAIKNLQRANSALTRLFGFEEETENE*
Ga0102861_10192087	F001477	AGGA	MSNVYTIHPPKSDLILFYEIQEPNGGNTWGGGEAKDAIQWLFLAPVGSRVLVSAWDSDEEDAHLVGQTIDITEIIQQAREVGL*
Ga0102861_10192088	F003863	GGAGG	MESKQVSGRQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIINPDSRLTIAVHTRANAVPDVAGRTDYDSSDEGYNGGEA*