Scaffold Ga0102861_1002462

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1002462
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4047
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013886	Metagenome / Metatranscriptome	267	N
F024308	Metagenome / Metatranscriptome	206	N
F024548	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100246211	F024548	N/A	MKSADNIVEVKESELKKYIKLKEGSKIEEGDLVNVYDNTYAEISKGSRVCKEVVNKFNTILRKK*
Ga0102861_10024627	F024308	N/A	VKKIILTKIECEFLIECLEMLGKYTDDSPADSKWFEKMDTTQRLYELEMEYFNIKKYGVPSTKKEMIKWILTKVKTKSVDF*
Ga0102861_10024628	F013886	N/A	MKNNMEKPNAFAFKAKIGESQEIQLCMCIRENDKWMENDIFSIPEGHPELSPYIDEQLFNVVFIGYEKDDSKEGFWITHQNSYFMKSDTILSEDLFNKGEFFNTVEKGYQHFYEQSITSEWQGGQTQTGEQENL*