Scaffold Ga0102861_1001727

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1001727
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4697
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_10017271	F009004	N/A	MKTEFNKVIDFLETQQQENKLNTNQLHLIIQTLATFLDDEQLQEVENLFNQFKK*
Ga0102861_100172710	F005814	N/A	MELELLSSRINLNHTCLKLQVSIEDIKTKHPNRTDLISSMEQSLYEIKKAMVVYQTLEKEFRVARQINFDLQHINLELKQELKDLKKIIEFNNVEL*
Ga0102861_10017272	F034772	N/A	MKNLIDYFTPTTEEHKSFLRHFLSTLTVFIVLGGMFYCLMYFKAL*
Ga0102861_10017273	F009958	N/A	MENRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEFAFIELDVEVSEKWLTETDDNLQPHVLGVRILEDLRLEIQEAINSDLVHYNFWEWKASNDESNYNFYHEL*
Ga0102861_10017274	F006463	N/A	MNTETIYEQMDWWKRQWRGSFDLHLYLEICRIKKNENQIQKPMKRFKATFKTWAYVGAPMKLETRIVEAYDTHHVKNLIQKNDDIIIEIKQIEK*